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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12159378_12163725_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12159378 - 12163725
Intron Length:
4348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCTTGGTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCAGCGGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CTTTCAGTAATT
Flanking Amino Acid:
FYHIKNSQGYEVPDDYYKHD
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.3
55
41.9
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
50.8
0.02
1.2
52.7
41.6
Minor 5ss
36.9
-1.5
3.6
52.8
46.3
Minor BPS
55.9
0.26
2.3
80.74
41.5

Associated Gene:

Gene:
CCNYL1
Ensembl Gene ID:
ENSAPLG00000007167
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024753
12148939 - 12169307
20369