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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12163068_12165254_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12163068 - 12165254
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGTAAGA
5'SS Class:
weak_major
3'SS Sequence:
TGTTAAAACATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTGTTGTTAAAA
Flanking Amino Acid:
VSQPNLRSTIKFLLCRDSDR
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.1
54.3
38.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
59
0.2
1
52.4
40.7
Minor 5ss
27.8
-2.5
3.1
30.8
36.7
Minor BPS
56.2
0.19
2.1
71.86
40.4

Associated Gene:

Gene:
CCNYL1
Ensembl Gene ID:
ENSAPLG00000007167
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007460
12148939 - 12171822
22884