About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12169316_12171794_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12169316 - 12171794
Intron Length:
2479

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTT|GCAGGCACA
5'SS Class:
weak_major
3'SS Sequence:
CTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCTTCCTTTTTT
Flanking Amino Acid:
LPEGKRAKPYLALESNPSD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.4
59.3
39.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
30.5
-2.2
4.1
45.9
43.5
Minor BPS
46.1
-0.2
3.6
79.54
43

Associated Gene:

Gene:
CCNYL1
Ensembl Gene ID:
ENSAPLG00000007167
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007460
12148939 - 12171822
22884