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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12194832_12194949_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12194832 - 12194949
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCCCCGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CCGTGCTGAACT
Flanking Amino Acid:
LGVAAVVWDAAVVLCAYLEM
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
67.2
0.39
0.8
65.7
30.2
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
52.4
0.15
2
68.2
48.4

Associated Gene:

Gene:
METTL21A
Ensembl Gene ID:
ENSAPLG00000007133
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007404
12194691 - 12196454
1764