About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12195062_12196056_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12195062 - 12196056
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTACCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CAGACATTAACC
Flanking Amino Acid:
GLLGIVATLLGARVTITDRE
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.9
38.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
63.8
0.31
0.9
55.9
40.1
Minor 5ss
34.7
-1.7
3.8
47.1
48.3
Minor BPS
56
0.17
1.7
61.72
43.1

Associated Gene:

Gene:
METTL21A
Ensembl Gene ID:
ENSAPLG00000007133
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007404
12194691 - 12196454
1764