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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12207540_12209841_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12207540 - 12209841
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGTTCTGGATT
Flanking Amino Acid:
RKREVRLMKNREAARECRRK
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.9
85.2
29.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
32.8
-2
3.7
46
42.3
Minor BPS
63.3
0.5
1.4
78.87
37.8

Associated Gene:

Gene:
CREB1
Ensembl Gene ID:
ENSAPLG00000006786
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007066
12207395 - 12221503
14109