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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12213038_12215839_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12213038 - 12215839
Intron Length:
2802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CTGTCTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAAAA
Flanking Amino Acid:
REILSRRPSYRKILNDLSSD
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.5
0.55
1
68.8
42
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
68.9
0.59
1.6
81.74
32.6

Associated Gene:

Gene:
CREB1
Ensembl Gene ID:
ENSAPLG00000006786
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007066
12207395 - 12221503
14109