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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12215941_12217930_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12215941 - 12217930
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
TTCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATTT
Flanking Amino Acid:
IQSPQVQTVQISTIAESEDS
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.3
0.91
0.7
88.7
27
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
62
0.46
1.6
74.68
43.1

Associated Gene:

Gene:
CREB1
Ensembl Gene ID:
ENSAPLG00000006786
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007066
12207395 - 12221503
14109