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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12316375_12334070_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12316375 - 12334070
Intron Length:
17696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGTG
5'SS Class:
major
3'SS Sequence:
CTCCCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACTC
Flanking Amino Acid:
HLKAHQRTHTGEKPYKCSWE
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.2
41.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
78.7
0.65
0.7
72.6
25.6
Minor 5ss
35.3
-1.7
3.5
49.3
46.9
Minor BPS
41.9
-0.6
2
45.97
43.7

Associated Gene:

Gene:
KLF7
Ensembl Gene ID:
ENSAPLG00000006752
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007002
12286328 - 12340930
54603