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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12334195_12340878_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12334195 - 12340878
Intron Length:
6684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
GTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATT
Flanking Amino Acid:
AKPFKCNHCDRCFSRSDHLA
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.4
0.82
0.8
80.8
36.4
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
74.3
0.84
1.3
87.25
31.8

Associated Gene:

Gene:
KLF7
Ensembl Gene ID:
ENSAPLG00000006752
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007002
12286328 - 12340930
54603