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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12404591_12405592_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12404591 - 12405592
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGCCT
5'SS Class:
major
3'SS Sequence:
TATTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTTGTATT
Flanking Amino Acid:
KESYEKLLPSGDLYKEKKEM
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.2
42.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
90.4
0.91
0.7
88.7
27.9
Minor 5ss
29.8
-2.3
3.1
40.6
45.2
Minor BPS
56.3
0.28
1.7
79.72
37

Associated Gene:

Gene:
FASTKD2
Ensembl Gene ID:
ENSAPLG00000006177
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037276
12401733 - 12412178
10446
ENSAPLT00000020359
12401733 - 12412178
10446
ENSAPLT00000006413
12401733 - 12412178
10446
ENSAPLT00000041313
12401733 - 12416804
15072