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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12406325_12406598_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12406325 - 12406598
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCTCTTGACC
Flanking Amino Acid:
SSVCILDKKQIILFLSAFEI
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
89.3
0.88
0.8
87.9
29.4
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
77.1
0.84
1.1
83.09
29.6

Associated Gene:

Gene:
FASTKD2
Ensembl Gene ID:
ENSAPLG00000006177
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020359
12401733 - 12412178
10446
ENSAPLT00000006413
12401733 - 12412178
10446
ENSAPLT00000041313
12401733 - 12416804
15072
ENSAPLT00000037276
12401733 - 12412178
10446