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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12409730_12411024_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12409730 - 12411024
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
CTTTCTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TCTTTCTTCATC
Flanking Amino Acid:
KNVSALQAGLLLLAEQRIPS
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
66.3
34.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
82
0.72
0.8
82
28.3
Minor 5ss
30.3
-2.3
3
41.3
44.8
Minor BPS
64.1
0.43
1.7
73.1
38.8

Associated Gene:

Gene:
FASTKD2
Ensembl Gene ID:
ENSAPLG00000006177
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037276
12401733 - 12412178
10446
ENSAPLT00000006413
12401733 - 12412178
10446