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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12411129_12411494_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12411129 - 12411494
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AACTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AACTCTTTAACA
Flanking Amino Acid:
LVQTLLRVCQEKLNQLDNRC
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
71.1
0.47
1
65.9
38.8
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
75.7
0.8
1.1
74.8
36.6

Associated Gene:

Gene:
FASTKD2
Ensembl Gene ID:
ENSAPLG00000006177
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020359
12401733 - 12412178
10446
ENSAPLT00000006413
12401733 - 12412178
10446
ENSAPLT00000041313
12401733 - 12416804
15072
ENSAPLT00000037276
12401733 - 12412178
10446