Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12412056_12416696_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12412056 - 12416696

Intron Length:

4641

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTCACCTCT

5'SS Class:

weak_major

3'SS Sequence:

CAGCGGGCACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAAACAC

U12 Branch Point Sequence:

GCCACAAGAAAA

Flanking Amino Acid:

WELHAARPEYDPLENVNFRK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.5

56.2

43.7

Major BPS

47.8

-0.1

53.1

30.9

Major PPT

44.3

-0.3

1.1

30.5

35.5

Minor 5ss

49.9

-0

2.6

Minor BPS

37.7

-0.9

1.8

41.73

37.9

Associated Gene:

Gene:

FASTKD2

Ensembl Gene ID:

ENSAPLG00000006177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041313

12401733 - 12416804

15072