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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1241487_1245211_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1241487 - 1245211
Intron Length:
3725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
RIFVGGIDFKTNENDLRKFF
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.4
0.66
0.9
74.7
39.8
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
BOLL
Ensembl Gene ID:
ENSAPLG00000006193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006435
1241412 - 1259551
18140