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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12416179_12417107_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12416179 - 12417107
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCCTTCTTATTT
Flanking Amino Acid:
SRPLMNLIYDSEWIHSEFLS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.8
0.74
1
80.6
37
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
62.6
0.48
1.6
74.56
43.3

Associated Gene:

Gene:
MDH1B
Ensembl Gene ID:
ENSAPLG00000006087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041806
12412662 - 12420512
7851
ENSAPLT00000006316
12412662 - 12420512
7851