Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12417272_12417929_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12417272 - 12417929

Intron Length:

658

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACCTA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAG

U12 Branch Point Sequence:

GTTTGAGTAATT

Flanking Amino Acid:

EIVSVGILSEGQFCIPEGIV

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

71.3

40.5

Major BPS

56.5

0.16

1.6

40.9

Major PPT

85.3

0.79

0.7

80.2

25.1

Minor 5ss

40.8

-1

3.2

56.1

Minor BPS

46.3

-0.2

2.5

73.64

43.4

Associated Gene:

Gene:

MDH1B

Ensembl Gene ID:

ENSAPLG00000006087

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041806

12412662 - 12420512

7851

ENSAPLT00000006316

12412662 - 12420512

7851