Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12418070_12418803_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12418070 - 12418803

Intron Length:

734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGATGATT

5'SS Class:

major

3'SS Sequence:

TATTATTATTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTTATT

Flanking Amino Acid:

LERLSHDLIQEKLIALKKIK

Intron Amino Acid Position:

455

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

80.5

33.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.3

0.68

0.9

78.2

39.7

Minor 5ss

32.8

-2

3.3

48.4

47.4

Minor BPS

69.2

0.69

1.5

86.8

32.8

Associated Gene:

Gene:

MDH1B

Ensembl Gene ID:

ENSAPLG00000006087

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041806

12412662 - 12420512

7851

ENSAPLT00000006316

12412662 - 12420512

7851