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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12436049_12437734_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12436049 - 12437734
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTA
Flanking Amino Acid:
TPEQDKTKIQAIASFEADML
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.1
0.97
0.7
88.7
26.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
61.6
0.36
1.5
69.82
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005888
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006091
12434143 - 12466974
32832