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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12437806_12438749_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12437806 - 12438749
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCCTGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCCAGCAAAATT
Flanking Amino Acid:
DSLRSIHNESRNMKKKFNKW
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
56.5
0.15
1.2
60.9
40.5
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
41
-0.6
2.2
56.74
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005888
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006091
12434143 - 12466974
32832