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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12440646_12441211_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12440646 - 12441211
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTT
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
ATGCTCTGAAAC
Flanking Amino Acid:
KDALSLQAQSAQQSALKQDF
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
72.5
37.2
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
34.6
-1.7
3.8
55.8
48.4
Minor BPS
51.1
0.01
1.5
60.45
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005888
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006091
12434143 - 12466974
32832