Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1245304_1246788_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1245304 - 1246788

Intron Length:

1485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTTGGTATA

5'SS Class:

major

3'SS Sequence:

TCTTTTTGTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

AAAATACGAACT

Flanking Amino Acid:

IVNDRAGISKGYGFITFETQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.3

70.1

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

83.9

0.76

0.8

84.6

30.4

Minor 5ss

33.8

-1.8

2.9

35.1

41.1

Minor BPS

41.5

-0.5

1.9

56.69

38.3

Associated Gene:

Gene:

BOLL

Ensembl Gene ID:

ENSAPLG00000006193

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006435

1241412 - 1259551

18140