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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12485045_12485930_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12485045 - 12485930
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTATCTTTAAAC
Flanking Amino Acid:
FYHQGRIVDCSGAHVLLDDD
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.1
0.68
0.8
74
36.5
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
69.4
0.59
1.4
72.33
38.7

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526