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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12491362_12491852_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12491362 - 12491852
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CCTCATTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TATTCCTCATTT
Flanking Amino Acid:
DGPCCNTSCLFFPRGYDCRY
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
76.1
32.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
76.8
0.6
0.8
68.7
36.9
Minor 5ss
35.7
-1.6
3.5
55
43.6
Minor BPS
63
0.49
1.8
81.68
39.9

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526