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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12491940_12492724_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12491940 - 12492724
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GGGAAATTAAAA
Flanking Amino Acid:
GEECDCGFRMECYSDCCKKC
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.85
1
77.5
36.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.4
0.82
0.7
84.9
29.7
Minor 5ss
24.9
-2.9
3.6
30.5
37.5
Minor BPS
44
-0.4
1.8
49.99
39.7

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526