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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1249455_1251426_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1249455 - 1251426
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
AACTCACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTACTGTTAACT
Flanking Amino Acid:
AVRKQQIRIPRSTVIPESGT
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
76.2
39
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72
0.5
0.9
67
38.5
Minor 5ss
49.3
-0
2.5
69.1
35.5
Minor BPS
61.6
0.44
2.1
81.99
39.2

Associated Gene:

Gene:
BOLL
Ensembl Gene ID:
ENSAPLG00000006193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006435
1241412 - 1259551
18140