About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12505129_12508933_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12505129 - 12508933
Intron Length:
3805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TGTGTTCTACTT
Flanking Amino Acid:
ELMIVNDHKMFKKHRSSNAY
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
83.1
0.74
0.7
81.3
23.7
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
45
-0.3
1.9
64.06
41.3

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526