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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12509960_12510466_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12509960 - 12510466
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTAATTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTCTTCAATT
Flanking Amino Acid:
TQASKQLRDLETDSSSEWPF
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.7
0.53
1
68.2
42
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
67.6
0.63
1.4
79.93
36

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526