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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12510540_12512758_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12510540 - 12512758
Intron Length:
2219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTACCA
Flanking Amino Acid:
IEPMDLTHSRESKSRPHIIQ
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.7
40.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.3
0.84
0.8
82.2
34.2
Minor 5ss
39.1
-1.2
3
46.8
42.6
Minor BPS
76.8
0.84
1.5
86.69
32.1

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526