About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12512823_12513520_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12512823 - 12513520
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CCCTATGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTAATCCTAATT
Flanking Amino Acid:
KVALSTCNGLHGMFEDRNYL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.4
0.44
0.9
60.7
40
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
54.1
0.21
1.7
71.06
39.6

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526