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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1251555_1252327_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1251555 - 1252327
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGACTTGTAACT
Flanking Amino Acid:
EVASVPQPWPSRSVSSSPMM
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
75.5
0.63
1
66
40.9
Major PPT
79.4
0.66
1
83.6
31.9
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
49.9
0.07
2
70.46
40.5

Associated Gene:

Gene:
BOLL
Ensembl Gene ID:
ENSAPLG00000006193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006435
1241412 - 1259551
18140