About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12517551_12528447_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12517551 - 12528447
Intron Length:
10897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
SKFILDLTLNNDLLSSNYVE
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
ADAM23
Ensembl Gene ID:
ENSAPLG00000005205
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005457
12482711 - 12536236
53526