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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1252400_1253432_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1252400 - 1253432
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
TGTTTGAGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GATTATGTAAGT
Flanking Amino Acid:
VYQPPTYHYQAPTQCLPGQW
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
69
0.43
1
67
43.8
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
45.3
-0.2
2.3
66.6
43.9

Associated Gene:

Gene:
BOLL
Ensembl Gene ID:
ENSAPLG00000006193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006435
1241412 - 1259551
18140