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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1253481_1254143_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1253481 - 1254143
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
PGQWQWSVPQSPASSPSFFY
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
BOLL
Ensembl Gene ID:
ENSAPLG00000006193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006435
1241412 - 1259551
18140