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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1254273_1255296_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1254273 - 1255296
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTATATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
FLLVEAAVPEPYSDHGVQAP
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.8
83.5
31.4
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
BOLL
Ensembl Gene ID:
ENSAPLG00000006193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006435
1241412 - 1259551
18140