About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12602042_12602779_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12602042 - 12602779
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
CCTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAGCTGTTGATG
Flanking Amino Acid:
LAQYESKKSKKPAVVAKSSI
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.1
42.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85
0.79
0.7
77
31.8
Minor 5ss
45.6
-0.5
2.8
58.7
40.1
Minor BPS
44.4
-0.5
2
47.66
40.2

Associated Gene:

Gene:
EEF1B2
Ensembl Gene ID:
ENSAPLG00000004841
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005005
12601344 - 12604982
3639