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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12602847_12603213_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12602847 - 12603213
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTAGTG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATGACT
Flanking Amino Acid:
IDLFGSDDEEESEEAKKLRE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
62.9
41.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
33
-1.9
3.6
47.2
48.1
Minor BPS
73.4
0.82
1.5
92.25
29.8

Associated Gene:

Gene:
EEF1B2
Ensembl Gene ID:
ENSAPLG00000004841
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005005
12601344 - 12604982
3639