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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12603338_12604594_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12603338 - 12604594
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGCTTCTTAACA
Flanking Amino Acid:
HIKSYEKQKASLPGVKKALG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
69.5
41.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
87.7
0.85
0.7
85.6
29.1
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
74.4
0.76
1.2
74.09
37.5

Associated Gene:

Gene:
EEF1B2
Ensembl Gene ID:
ENSAPLG00000004841
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005005
12601344 - 12604982
3639