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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12605891_12606109_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12605891 - 12606109
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTACCC
Flanking Amino Acid:
RALARASGASGRTTATAASN
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
96.4
1.04
0.5
95.9
14.1
Minor 5ss
33.1
-1.9
3.1
38.5
40.7
Minor BPS
59.1
0.26
1.8
72.03
39

Associated Gene:

Gene:
NDUFS1
Ensembl Gene ID:
ENSAPLG00000004262
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027710
12605749 - 12619110
13362
ENSAPLT00000017684
12605749 - 12621231
15483
ENSAPLT00000004426
12605749 - 12619384
13636