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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12608705_12608795_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12608705 - 12608795
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CTGAACTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TATTCCTGAACT
Flanking Amino Acid:
LTNSEKSRKAREGVMEFLLA
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
61.6
0.26
1
54.9
39.8
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
83.1
1.12
1.2
94.78
31.4

Associated Gene:

Gene:
NDUFS1
Ensembl Gene ID:
ENSAPLG00000004262
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027710
12605749 - 12619110
13362
ENSAPLT00000017684
12605749 - 12621231
15483
ENSAPLT00000004426
12605749 - 12619384
13636