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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12609108_12609796_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12609108 - 12609796
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTCC
5'SS Class:
major
3'SS Sequence:
CTGTGTCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
TRCIQCTRCIRFASEVAGVD
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.5
39
Major BPS
100
1.24
0.5
100
0
Major PPT
70.3
0.46
1
62.7
43.1
Minor 5ss
43.5
-0.7
3.1
60
44.7
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
NDUFS1
Ensembl Gene ID:
ENSAPLG00000004262
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027710
12605749 - 12619110
13362
ENSAPLT00000017684
12605749 - 12621231
15483
ENSAPLT00000004426
12605749 - 12619384
13636