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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12610607_12610980_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12610607 - 12610980
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTACTAATA
Flanking Amino Acid:
INEEWISDKTRFAYDGLKRQ
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.1
0.36
1
62.6
43.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
58.6
0.27
1.9
76.95
33.6

Associated Gene:

Gene:
NDUFS1
Ensembl Gene ID:
ENSAPLG00000004262
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027710
12605749 - 12619110
13362
ENSAPLT00000017684
12605749 - 12621231
15483
ENSAPLT00000004426
12605749 - 12619384
13636