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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12612268_12612899_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12612268 - 12612899
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CACTTTGCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTCTTTTATCA
Flanking Amino Acid:
TEEIFPTDGAGTDLRSNYLL
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.7
0.47
0.9
64.8
36.2
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
58.5
0.26
1.6
68.98
37.4

Associated Gene:

Gene:
NDUFS1
Ensembl Gene ID:
ENSAPLG00000004262
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027710
12605749 - 12619110
13362
ENSAPLT00000017684
12605749 - 12621231
15483
ENSAPLT00000004426
12605749 - 12619384
13636