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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12618432_12619019_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12618432 - 12619019
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTACACAAAA
Flanking Amino Acid:
YFKQANELSKIQSVEHPRLW
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
46.7
-0.2
2
64.61
40.6

Associated Gene:

Gene:
NDUFS1
Ensembl Gene ID:
ENSAPLG00000004262
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027710
12605749 - 12619110
13362