Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12638635_12638740_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

12638635 - 12638740

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTTT

5'SS Class:

major

3'SS Sequence:

TCGGTTCTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTTTTCTTAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

74.1

36.8

Major BPS

0.92

0.9

86.2

29.1

Major PPT

79.9

0.67

0.9

76.9

37.3

Minor 5ss

48.8

-0.1

3.1

73.2

43.6

Minor BPS

87.5

1.17

0.8

90.77

23.3

Associated Gene:

Gene:

INO80D

Ensembl Gene ID:

ENSAPLG00000004131

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004247

12638539 - 12662243

23705