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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12662244_12662735_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
12662244 - 12662735
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTAAGAAAA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
60.4
44.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.9
0.67
0.9
82.5
26.7
Minor 5ss
30
-2.3
3.4
40.1
46
Minor BPS
46.8
-0.2
2
67.93
37.4

Associated Gene:

Gene:
INO80D
Ensembl Gene ID:
ENSAPLG00000004131
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020235
12638741 - 12663340
24600