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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12701619_12702218_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12701619 - 12702218
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTGGTACT
5'SS Class:
major
3'SS Sequence:
CATTCCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GATCCCTGGATA
Flanking Amino Acid:
EQDFEDNDDTDYFGSDRNDT
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
67.8
43
Major BPS
68
0.45
1
57.8
39
Major PPT
74.3
0.55
0.9
67.1
33.5
Minor 5ss
33.8
-1.8
2.9
45.7
42
Minor BPS
55
0.15
1.5
62.66
36.8

Associated Gene:

Gene:
NRP2
Ensembl Gene ID:
ENSAPLG00000002735
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002886
12700636 - 12781863
81228