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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12702288_12716115_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12702288 - 12716115
Intron Length:
13828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CCTCTTTAAACA
Flanking Amino Acid:
NCMEPITAFPVNFPRMEDDF
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
80.6
0.69
0.9
73.5
41.9
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
50.2
0
1.7
59.25
41.4

Associated Gene:

Gene:
NRP2
Ensembl Gene ID:
ENSAPLG00000002735
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002886
12700636 - 12781863
81228