Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12736770_12737855_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12736770 - 12737855

Intron Length:

1086

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCACT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCATCAT

U12 Branch Point Sequence:

TGTGCATCATGT

Flanking Amino Acid:

IQDPKTMQAKLFEGNIHYDI

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

75.3

40.8

Major BPS

57.9

0.2

1.4

44.2

Major PPT

85.8

0.81

0.7

80.7

24.4

Minor 5ss

40.6

-1

3.2

58.1

46.3

Minor BPS

41.3

-0.5

2.2

62.13

47.2

Associated Gene:

Gene:

NRP2

Ensembl Gene ID:

ENSAPLG00000002735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033840

12707782 - 12781862

74081

ENSAPLT00000002886

12700636 - 12781863

81228